PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG226700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 288aa    MW: 31062.3 Da    PI: 8.4016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG226700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-0993138454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+e+ErrRR+riN  ++ Lr+++  a     + ++Ka+ L ++v  +k+L
  Pavir.9KG226700.1.p  93 DHSEAERRRRERINAHLAALRRMILDA-----RQMDKATLLARVVCQLKDL 138
                          59************************9.....7899999999999877776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.17389138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1092147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-793138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-1094151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-895144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.25E-9181247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLLRSDSFCF EASLVSEDTV VQASELMAAA SACQPFQEGN QRQQLLPLHH GGSAVLPSVY  60
GDDTALRQAS SVSVPPPTAP SGRSATEARA LKDHSEAERR RRERINAHLA ALRRMILDAR  120
QMDKATLLAR VVCQLKDLKR KAAETSQPLP IPAEANGITV DCYTGAAAVG YGRPATYIRA  180
SVSCDERPGL LADLAGAFRG LRLRPMRADM ASLGGRARCE FMLCREEGDV VSAGRLKALE  240
DGVRQALASA ALPETAYGCN YRTRRQRVLE SHYALGHELG VGDHHGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978282.11e-126PREDICTED: transcription factor bHLH51-like
TrEMBLK3YDA91e-103K3YDA9_SETIT; Uncharacterized protein
STRINGSi012213m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.12e-24basic helix-loop-helix 32